{ "name": "boltz — 8 skills", "slug": "source-skills-78a56bc4142ec65b73db0635", "type": "skills", "category": "developer-tools", "example": false, "evidence_state": "pinned_source_listing", "stamp": "Pinned source listing — machine-checked", "summary": "Pinned source declarations and file hashes were listed.", "outcome": "Listed 8 skill declarations. Ran 46 git commands; each one's exit status and output hash is in commands.json. Scope: acquisition and static inspection.", "rule_results": [ "The retained source tree matches its acquisition manifest.", "Declared skill names (listing.json): boltz-check-status; boltz-cli-setup; boltz-protein-design; boltz-protein-screen; boltz-small-molecule-adme; boltz-small-molecule-design; boltz-small-molecule-screen; boltz-structure-and-binding" ], "task": "What declarations and files are present in this pinned source?", "setup": "Git blob acquisition followed by static source inspection.", "limitations": "Scope: acquisition and static inspection. 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"discovered_date": "2026-10-16", "retested_date": "2026-10-18", "reviewed_date": "2026-10-18", "published_date": "2026-10-18", "modified_date": "2026-10-18", "reviewer": "machine pipeline", "harness_version": "toolwitness harness at commit ce8871b5a9b1043f5ad9a568fb833cf91f333efa", "claude_code_version": "Not applicable: static source inspection (commands.json).", "model_id": "Not applicable: static source inspection (commands.json).", "scanner_version": "Not applicable: static source inspection.", "rulepack_version": "Not applicable: static source inspection.", "agents": [], "disclaimer": "This record lists declarations and file hashes from a pinned source tree. Git command results from acquisition and static inspection are retained in commands.json. Scope: acquisition and static inspection. It is not a security or quality verdict. Changed bytes are outside this record.", "commands": [ "Ran 46 git commands; each one's exit status and output hash is in commands.json. Scope: acquisition and static inspection." ], "prompt_list": [ "Not applicable: static source inspection (commands.json)." ], "history": [ "2026-10-18T09:12:22Z: pinned source inspection" ], "application": { "name": "boltz — 8 skills", "softwareVersion": "beafb3c16236347ab10fb54f78a5da49cbf7c7bb", "applicationCategory": "DeveloperApplication", "operatingSystem": "Not exercised" }, "artifacts": { "transcript": "Ran 46 git commands; each one's exit status and output hash is in commands.json. Scope: acquisition and static inspection.", "sinkhole_log": "Not applicable: static source inspection (commands.json).", "canary_log": "Not applicable: static source inspection (commands.json).", "scanner_output": "Not applicable: static source inspection (commands.json).", "normalized_text": "{\n \"listing\": {\n \"skills\": [\n {\n \"path\": \"plugins/boltz/skills/boltz-check-status/SKILL.md\",\n \"name\": \"boltz-check-status\",\n \"description\": \"Boltz job status and result recovery. Use when listing jobs, checking progress, resuming downloads, recovering results, or downloading an existing job ID. 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Use when generating protein, peptide, antibody, nanobody, or custom binder candidates for a target. Not for screening existing proteins or small molecules.\",\n \"files\": {\n \"plugins/boltz/skills/boltz-protein-design/SKILL.md\": \"f6633dbee8c38652d288f3bf08a926dfa569a148451730e555fa51a4d33de176\",\n \"plugins/boltz/skills/boltz-protein-design/agents/openai.yaml\": \"ab9ef52486c6e123c1317be3f66f2dd67876d96b092714c510638d07a97304cf\",\n \"plugins/boltz/skills/boltz-protein-design/references/api.md\": \"0a3335ecd037765c214a71fedfb98413519fe7f303495ecf406240a645a44219\",\n \"plugins/boltz/skills/boltz-protein-design/references/results.md\": \"9b0fb844d854730929b543be708c861c0e10ca3f47e13afecf6bdeca0ce6003d\",\n \"plugins/boltz/skills/boltz-protein-design/references/target-exploration.md\": \"4a67fed38ed95124120e6c473c4ef83d8b4a79f73b5f2e148955de2f7a574f8e\",\n \"plugins/boltz/skills/boltz-protein-design/scripts/_common.py\": \"879caa7a4364aea5f1cd448914c6e33107819163ecfca8b39d894d5932fc2c70\",\n \"plugins/boltz/skills/boltz-protein-design/scripts/analyze_results.py\": \"c1751247610b732fd4a77b7936194a7e039b753e511f3420c1aa0f8ca12ed805\",\n \"plugins/boltz/skills/boltz-protein-design/scripts/crop_radius.py\": \"65b66927cec974119f358f103388ef228caab8c3e24db022b59cae45d8532c75\",\n \"plugins/boltz/skills/boltz-protein-design/scripts/detect_disorder.py\": \"cf50b1e60e40edd99b178e6d81c06cd85c2f9a50f31be91860c128aa2a42b238\",\n \"plugins/boltz/skills/boltz-protein-design/scripts/requirements.txt\": \"7264858e6164ceb4cee8a16e598979cd6ffc980d74345eac7daf0def50b6917f\",\n \"plugins/boltz/skills/boltz-protein-design/scripts/scan_sites.py\": \"989d780273e21fa2403a6659d30408d0376f049188bbbfa13cef9f8399e7acd8\",\n \"plugins/boltz/skills/boltz-protein-design/scripts/terminus.py\": \"c3cf827d2e0e88d56336b851168f0b2a76e3456bd28cb38913097d94f7042216\"\n }\n },\n {\n \"path\": \"plugins/boltz/skills/boltz-protein-screen/SKILL.md\",\n \"name\": \"boltz-protein-screen\",\n \"description\": \"Screen existing protein binders with Boltz. Use when ranking a supplied protein, peptide, antibody, nanobody, or binder library against a target. Not for designing new proteins or screening small molecules.\",\n \"files\": {\n \"plugins/boltz/skills/boltz-protein-screen/SKILL.md\": \"101149e875f802918bb2665cb69f54f170fa0a8e533b4f8f9bcff38a1848f30d\",\n \"plugins/boltz/skills/boltz-protein-screen/agents/openai.yaml\": \"336da59643a0c860d7ea547268a0907a1e7580786fbb6fee15545ba1d0df7528\",\n \"plugins/boltz/skills/boltz-protein-screen/references/api.md\": \"c44814e089a630176776381ba173fe736a2acd447750143ec66892b08aee9c94\",\n \"plugins/boltz/skills/boltz-protein-screen/references/results.md\": \"637a9e038b8032cf1fa2f444d8b4877232850e65e675818e73ed89ecb11f62ec\"\n }\n },\n {\n \"path\": \"plugins/boltz/skills/boltz-small-molecule-adme/SKILL.md\",\n \"name\": \"boltz-small-molecule-adme\",\n \"description\": \"Predict Tier-1 ADME/ADMET for small molecules with Boltz from bare SMILES — no target, no docking. Use when the user wants solubility, permeability, or lipophilicity/logD for a molecule or list of molecules. 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Not for screening existing molecules or one-off docking.\",\n \"files\": {\n \"plugins/boltz/skills/boltz-small-molecule-design/SKILL.md\": \"1628673c1ee4ee6481872a9d09837055a764dd1b24bf964e26bbf82d70c078b2\",\n \"plugins/boltz/skills/boltz-small-molecule-design/agents/openai.yaml\": \"4aca7d99d081f82c81c36ab3137f50ad26878d7e0007020817359de757491c68\",\n \"plugins/boltz/skills/boltz-small-molecule-design/references/api.md\": \"dd0050e979856e38327770cc084d821af071714b2c7a16118472d866541bb16e\",\n \"plugins/boltz/skills/boltz-small-molecule-design/references/results.md\": \"64eb671976d218d82b0f554d536771f82d939aae2a8313dc1ec10ea45624fe7a\"\n }\n },\n {\n \"path\": \"plugins/boltz/skills/boltz-small-molecule-screen/SKILL.md\",\n \"name\": \"boltz-small-molecule-screen\",\n \"description\": \"Screen existing small-molecule libraries with Boltz. Use when docking, scoring, or ranking a supplied SMILES or compound library against a target; also returns free Tier-1 ADME/ADMET (solubility, permeability, lipophilicity/logD) per molecule. Not for de novo molecule design, one-off docking, or ADME on bare SMILES with no target (use boltz-small-molecule-adme).\",\n \"files\": {\n \"plugins/boltz/skills/boltz-small-molecule-screen/SKILL.md\": \"6a030eed546b13d9012abad8f0899f6134f5425d933aa160906ac4f8da7c2bf3\",\n \"plugins/boltz/skills/boltz-small-molecule-screen/agents/openai.yaml\": \"46b195b0b2a383b9e03609d37b7c206e6283562584812283a85baf858c67dd5f\",\n \"plugins/boltz/skills/boltz-small-molecule-screen/references/api.md\": \"69a6f6b18e75fa0388bd5d6c62f7f4aff32a0b688b20d921c71f5df80823a45c\",\n \"plugins/boltz/skills/boltz-small-molecule-screen/references/results.md\": \"bf5ad31102d9c4d3e4837cec80ec34ca86dd19b1d6b77837a7468fe98025e52e\"\n }\n },\n {\n \"path\": \"plugins/boltz/skills/boltz-structure-and-binding/SKILL.md\",\n \"name\": \"boltz-structure-and-binding\",\n \"description\": \"Predict structures and binding for one defined complex with Boltz. Use when folding a protein, RNA, DNA, or ligand complex, docking one ligand, predicting an interface, or scoring binding. Not for screening libraries or design.\",\n \"files\": {\n \"plugins/boltz/skills/boltz-structure-and-binding/SKILL.md\": \"5eb0b2b94c771aa425cfa920be40fd4f27b1fab53835d73e3239203cbacd50bf\",\n \"plugins/boltz/skills/boltz-structure-and-binding/agents/openai.yaml\": \"30fc6331610b6fbc18c23f9b95b257cc4a2c0cc3506a5913486d0b8f64616442\",\n \"plugins/boltz/skills/boltz-structure-and-binding/references/api.md\": \"a6344051d919568cae06db7039a770c39b70028e48bf51e6d1d3a4a70cbf99c3\",\n \"plugins/boltz/skills/boltz-structure-and-binding/references/results.md\": \"ef45370500f899b9b7912e79bc059a68bcc34ac143d8afbb4577c807a4cf6015\"\n }\n }\n ],\n \"hooks\": [],\n \"executions\": []\n }\n}" }, "review_input": { "identity_artifact": "identity.json", "evidence_sha256": { "LOCK.json": "e9e1ee8f9514ded5fea1f5a86237958665ff3ff4bbdee697358000c3b3b1005b", "commands.json": "9dc4ad4c0dbb8b00a96b1b936c3d169ae67e5878f020b01668684820afa0b263", "complete.json": "91b504b43905fdc009504d516c45eea831f39a1995b9e7d69987c9756c936d6f", "identity.json": "87a6ac0d7ee646ff5773867ca707505934b62281ac9a374126345d8fcdb91d94", "listing.json": "47d0cdddebe46eac038fc709912886300389beeb6be14605a4d1c899dd280b60", "selection.json": "0ee6cf5e2f4ac80ffc4bfc9e72e290a9fb8ed9071f6f87aa9ccbfb1f0280b786" }, "claims": [ { "id": "acquired", "field": "summary", "text": "Pinned source declarations and file hashes were listed.", "sources": [ "LOCK.json", "listing.json", "commands.json" ] }, { "id": "listed", "field": "outcome", "text": "Listed 8 skill declarations. Ran 46 git commands; each one's exit status and output hash is in commands.json. Scope: acquisition and static inspection.", "sources": [ "LOCK.json", "listing.json", "commands.json" ] }, { "id": "tree", "field": "rule_results.0", "text": "The retained source tree matches its acquisition manifest.", "sources": [ "LOCK.json", "listing.json", "commands.json" ] }, { "id": "declared", "field": "rule_results.1", "text": "Declared skill names (listing.json): boltz-check-status; boltz-cli-setup; boltz-protein-design; boltz-protein-screen; boltz-small-molecule-adme; boltz-small-molecule-design; boltz-small-molecule-screen; boltz-structure-and-binding", "sources": [ "LOCK.json", "listing.json", "commands.json" ] } ] }, "review": { "kind": "machine-checked", "date": "2026-10-18", "reviewed_sha256": "eccf4e65a848a790982d700e93dd6bb06879afc9c3d844f128b0c499d76655a4", "gates": "bf3e94d570dcdb8215fc434f564809805a31b4e7ca6c995793b6955a3dab7de2", "codex": "4832fe72d905a4b6994d08d718d5de61fc6c7313f4efe24f416d6e7e17f5e8d0", "grok": "b336455647671eb306bfa04230adf3d78e965a6e07e5bf3df906c960cf120026", "summary": "Deterministic gates passed; every claim rebuilt from evidence with a reviewed template; Grok reported no standing refutation." } }